hmmer

profile hidden Markov models for protein sequence analysis

Command lineScience

Not tested on a device yet. What that means

Commands in the package

alimask
hmmalign
hmmbuild
hmmconvert
hmmemit
hmmfetch
hmmlogo
hmmpgmd
hmmpgmd_shard
hmmpress
hmmscan
hmmsearch
hmmsim
hmmstat
jackhmmer
makehmmerdb
nhmmer
nhmmscan
phmmer

About hmmer

From Debian's package description

HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries.
Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family.

From Debian's description of the hmmer package, under that package's license.

Dependencies

Depends on

libc6
libdivsufsort3

Related apps

snaplocation of genes from DNA sequence with hidden markov modelCommand line
fsaFast Statistical Alignment of protein, RNA or DNA sequencesCommand line
mclMarkov Cluster algorithmCommand line
4ti2mathematical tool suite for problems on linear spaces -- toolsCommand line
muscleMultiple alignment program of protein sequencesCommand line
clustaloGeneral-purpose multiple sequence alignment program for proteinsCommand line

All Linux science apps

Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the hmmer package, under that package's license.
Description: Debian's description of the hmmer package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.