murasaki-mpi
homology detection tool across multiple large genomes (MPI-version)
Command lineScience
Not tested on a device yet. What that means
Commands in the package
murasaki-mpigeneparse-mpimbfa-mpi
About murasaki-mpi
From Debian's package description
Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.
Murasaki is an anchor alignment software, which is
- exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 52 wall minutes))
- scalable (Arbitrarily parallelizable across multiple nodes using MPI. Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
- unlimited pattern length
- repeat tolerant
- intelligent noise reduction
This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.
From Debian's description of the murasaki-mpi package, under that package's license.
Dependencies
Depends on
murasaki-commonlibboost-filesystem1.83.0libboost-iostreams1.83.0libc6libgcc-s1libopenmpi40libstdc++6
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Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the murasaki-mpi package, under that package's license.
- Description: Debian's description of the murasaki-mpi package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.