ont-fast5-api

simple interface to HDF5 files of the Oxford Nanopore .fast5 file format

Command lineScience

Not tested on a device yet. What that means

Commands in the package

check_compression
compress_fast5
demux_fast5
fast5_subset
multi_to_single_fast5
single_to_multi_fast5

About ont-fast5-api

From Debian's package description

Ont_fast5_api is a simple interface to HDF5 files of the Oxford Nanopore .fast5 file format.
It provides:
Concrete implementation of the fast5 file schema using the generic h5py library
Plain-english-named methods to interact with and reflect the fast5 file schema
Tools to convert between multi_read and single_read formats
Tools to compress/decompress raw data in files

From Debian's description of the ont-fast5-api package, under that package's license.

Dependencies

Depends on

libc6
libgcc-s1
libstdc++6
libzstd1
python3
python3
python3-h5py
python3-numpy
python3-packaging
python3-pkg-resources
python3-progressbar
python3
libvbz-hdf-plugin-dev

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Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the ont-fast5-api package, under that package's license.
Description: Debian's description of the ont-fast5-api package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.