quicktree
Neighbor-Joining algorithm for phylogenies
Command lineScience
Not tested on a device yet. What that means
Commands in the package
quicktree
About quicktree
From Debian's package description
QuickTree is an efficient implementation of the Neighbor-Joining algorithm (PMID: 3447015), capable of reconstructing phylogenies from huge alignments in time less than the age of the universe.
QuickTree accepts both distance matrix and multiple-sequence-aligment inputs. The former should be in PHYLIP format. The latter should be in Stockholm format, which is the native alignment format for the Pfam database. Alignments in various formats can be converted to Stockholm format with the sreformat program, which is part of the HMMer package (hmmer.org).
The tress are written to stdout, in the Newick/New-Hampshire format use by PHYLIP and many other programs
From Debian's description of the quicktree package, under that package's license.
Dependencies
Depends on
libc6
Related apps
- phylippackage of programs for inferring phylogeniesCommand line
- bioperl-runBioPerl wrappers: scriptsCommand line
- hyphy-mpiHypothesis testing using Phylogenies (MPI version)Command line
- hyphy-ptHypothesis testing using Phylogenies (pthreads version)Command line
- ann-toolsApproximate Nearest Neighbor Searching library (tools)Command line
- cclibParsers and algorithms for computational chemistryCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the quicktree package, under that package's license.
- Description: Debian's description of the quicktree package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.