seqmagick
imagemagick-like frontend to Biopython SeqIO
Command lineScience
Not tested on a device yet. What that means
Commands in the package
seqmagick
About seqmagick
From Debian's package description
Seqmagick is a little utility to expose the file format conversion in BioPython in a convenient way.
Features include:
- Modifying sequences:
- Remove gaps
- Reverse & reverse complement
- Trim to a range of residues
- Change case
- Sort by length or ID
- Displaying information about sequence files
- Subsetting sequence files by:
- Position
- ID
- Deduplication
- Filtering sequences by quality score
- Trimming alignments to a region of interest defined by the forward and reverse primers
From Debian's description of the seqmagick package, under that package's license.
Dependencies
Depends on
python3-biopythonpython3-pygtriepython3
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Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the seqmagick package, under that package's license.
- Description: Debian's description of the seqmagick package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.