beast-mcmc
Bayesian MCMC phylogenetic inference
Command lineScience
Not tested on a device yet. What that means
Commands in the package
beast-mcmcbeast-tracerbeautiloganalyserlogcombinertreeannotatortreestat
About beast-mcmc
From Debian's package description
BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability. Included is a simple to use user-interface program for setting up standard analyses and a suit of programs for analysing the results.
From Debian's description of the beast-mcmc package, under that package's license.
Dependencies
Depends on
libhmsbeagle-javajunit4libcolt-free-javalibcommons-math-javalibjam-javalibjdom1-javalibjebl2-javalibmpj-javalibmtj-javadefault-jreorjava6-runtimelibnucleotidelikelihoodcore0libnucleotidelikelihoodcore0libnetlib-java
Related apps
- lokiMCMC linkage analysis on general pedigreesCommand line
- jagsJust Another Gibbs Sampler for Bayesian MCMC - binaryCommand line
- tachyon-bin-noxParallel/Multiprocessor Standalone Ray Tracer - with no X supportCommand line
- bali-phyBayesian Inference of Alignment and PhylogenyCommand line
- bitseqBayesian Inference of Transcripts from Sequencing DataCommand line
- mrbayesBayesian Inference of PhylogenyCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the beast-mcmc package, under that package's license.
- Description: Debian's description of the beast-mcmc package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.