beast2-mcmc
Bayesian MCMC phylogenetic inference
Command lineScience
Not tested on a device yet. What that means
Commands in the package
beast2-mcmcbeauti2treeannotator2
About beast2-mcmc
From Debian's package description
BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability. Included is a simple to use user-interface program for setting up standard analyses and a suit of programs for analysing the results.
This is no new upstream version of beast-mcmc (1.x) but rather a rewritten version.
From Debian's description of the beast2-mcmc package, under that package's license.
Dependencies
Depends on
libantlr4-runtime-javalibcolt-free-javalibhmsbeagle-javalibopenjfx-javadefault-jreopenjfx
Related apps
- lokiMCMC linkage analysis on general pedigreesCommand line
- jagsJust Another Gibbs Sampler for Bayesian MCMC - binaryCommand line
- bali-phyBayesian Inference of Alignment and PhylogenyCommand line
- bitseqBayesian Inference of Transcripts from Sequencing DataCommand line
- mrbayesBayesian Inference of PhylogenyCommand line
- prime-phylobayesian estimation of gene trees taking the species tree into accountCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the beast2-mcmc package, under that package's license.
- Description: Debian's description of the beast2-mcmc package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.