bifrost
parallel construction, indexing and querying of de Bruijn graphs
Command lineDevelopment
Not tested on a device yet. What that means
Commands in the package
Bifrost
About bifrost
From Debian's package description
Bifrost is a command-line tool for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.
- Build, index, color and query the compacted de Bruijn graph
- No need to build the uncompacted de Bruijn graph
- Reads or assembled genomes as input
- Output graph in GFA (can be visualized with Bandage), FASTA or binary
- Graph cleaning: short tip clipping, etc.
- Multi-threaded
- No parameters to estimate with other tools
- Exact or approximate k-mer search of queries
From Debian's description of the bifrost package, under that package's license.
Dependencies
Depends on
libbifrost0libc6libgcc-s1libstdc++6zlib1g
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Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the bifrost package, under that package's license.
- Description: Debian's description of the bifrost package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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