eigensoft
reduction of population bias for genetic analyses
Command lineScience
Not tested on a device yet. What that means
Commands in the package
baseprogconvertfeigenstrateigenstratQTLevec2pcaevec2pca-pedgc-eigensoftmergeitpcapcatoyploteigrescale_ellsmarteigenstratsmartpcasmartreltwstats
About eigensoft
From Debian's package description
The EIGENSOFT package combines functionality from the group's population genetics methods (Patterson et al. 2006) and their EIGENSTRAT stratification method (Price et al. 2006). The EIGENSTRAT method uses principal components analysis to explicitly model ancestry differences between cases and controls along continuous axes of variation; the resulting correction is specific to a candidate marker's variation in frequency across ancestral populations, minimizing spurious associations while maximizing power to detect true associations. The EIGENSOFT package has a built-in plotting script and supports multiple file formats and quantitative phenotypes.
From Debian's description of the eigensoft package, under that package's license.
Dependencies
Depends on
libblas3orlibblas.so.3libc6libgsl28liblapack3orliblapack.so.3liblapackeperl
Recommends
gnuplot
Related apps
- populationspopulation genetic softwareCommand line
- emmaxgenetic mapping considering population structureCommand line
- pirsProfile based Illumina pair-end Reads SimulatorCommand line
- mlpack-binintuitive, fast, scalable C++ machine learning library (binaries)Command line
xgterm (iraf)Image Reduction and Analysis Facility- c-munipackreduction of images carried out by CCD cameraCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the eigensoft package, under that package's license.
- Description: Debian's description of the eigensoft package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.