exonerate
generic tool for pairwise sequence comparison
Command lineScience
Not tested on a device yet. What that means
Commands in the package
exonerateesd2esiexonerate-serverfasta2esdfastaannotatecdnafastachecksumfastacleanfastaclipfastacompositionfastadifffastaexplodefastafetchfastahardmaskfastaindexfastalengthfastanrdbfastaoverlapfastareformatfastaremovefastarevcompfastasoftmaskfastasortfastasplitfastasubseqfastatranslatefastavalidcdsipcress
About exonerate
From Debian's package description
Exonerate allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. Much of the functionality of the Wise dynamic programming suite was reimplemented in C for better efficiency. Exonerate is an intrinsic component of the building of the Ensembl genome databases, providing similarity scores between RNA and DNA sequences and thus determining splice variants and coding sequences in general.
An In-silico PCR Experiment Simulation System (see the ipcress man page) is packaged with exonerate.
This package also comes with a selection of utilities for performing simple manipulations quickly on fasta files beyond 2Gb
From Debian's description of the exonerate package, under that package's license.
Dependencies
Depends on
libc6libglib2.0-0t64
Related apps
- condordistributed workload management systemCommand line
- wisecomparison of biopolymers, like DNA and protein sequencesCommand line
- minimap2versatile pairwise aligner for genomic and spliced nucleotide sequencesCommand line
- laganhighly parametrizable pairwise global genome sequence alignerCommand line
- last-aligngenome-scale comparison of biological sequencesCommand line
- eproverEquational theorem proverCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the exonerate package, under that package's license.
- Description: Debian's description of the exonerate package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.