lagan

highly parametrizable pairwise global genome sequence aligner

Command lineScience

Not tested on a device yet. What that means

Commands in the package

anal_gloc.pl
anchors
glocal
lagan.pl
lagan_chaos
mlagan
order
prolagan
rechaos.pl
slagan-mfa.pl
slagan.pl
supermap.pl
xmfa2mfa.pl

About lagan

From Debian's package description

Lagan takes local alignments generated by CHAOS as anchors, and limits the search area of the Needleman-Wunsch algorithm around these anchors.
Multi-LAGAN is a generalization of the pairwise algorithm to multiple sequence alignment. M-LAGAN performs progressive pairwise alignments, guided by a user-specified phylogenetic tree. Alignments are aligned to other alignments using the sum-of-pairs metric.

From Debian's description of the lagan package, under that package's license.

Dependencies

Depends on

libc6
libgcc-s1
libstdc++6

Related apps

exonerategeneric tool for pairwise sequence comparisonCommand line
mummerEfficient sequence alignment of full genomesCommand line
dolfin-binExecutable scripts for DOLFINCommand line
embossEuropean molecular biology open software suiteCommand line
kalignGlobal and progressive multiple sequence alignmentCommand line
clustalwglobal multiple nucleotide or peptide sequence alignmentCommand line

All Linux science apps

Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the lagan package, under that package's license.
Description: Debian's description of the lagan package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.