lefse

determine features of organisms, clades, taxonomic units, genes

Command lineScience

Not tested on a device yet. What that means

Commands in the package

lefse2circlader.py
lefse_format_input.py
lefse_plot_cladogram.py
lefse_plot_features.py
lefse_plot_res.py
lefse_run.py
qiime2lefse.py

About lefse

From Debian's package description

LEfSe (Linear discriminant analysis Effect Size) determines the features (organisms, clades, operational taxonomic units, genes, or functions) most likely to explain differences between classes by coupling standard tests for statistical significance with additional tests encoding biological consistency and effect relevance.

From Debian's description of the lefse package, under that package's license.

Dependencies

Depends on

python3-biom-format
python3-matplotlib
python3-numpy
python3-rpy2
python3
r-cran-coin

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All Linux science apps

Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the lefse package, under that package's license.
Description: Debian's description of the lefse package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.