Breadstick Get it on Google Play

bcftools

genomic variant calling and manipulation of VCF/BCF files

Command lineScience

Install

Not tested on a device yet. What that means

Commands in the package

  • bcftools
  • color-chrs.pl
  • gff2gff.py
  • guess-ploidy.py
  • plot-roh.py
  • plot-vcfstats
  • run-roh.pl
  • vcfutils.pl

About bcftools

From Debian's package description

BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.

From Debian's description of the bcftools package, under that package's license.

Dependencies

Depends on

  • libc6
  • libhts3t64

Recommends

  • perl
  • python3-gffutils
  • python3-matplotlib

Related apps

All Linux science apps

Sources and licenses

  • Name: the Debian package name.
  • Summary: Debian's short description of the bcftools package, under that package's license.
  • Description: Debian's description of the bcftools package, under that package's license.
  • Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
  • Popularity: Debian Popularity Contest counts.

More in About the catalog.