meryl
in- and out-of-core kmer counting and utilities
Command lineScience
Not tested on a device yet. What that means
Commands in the package
merylexistDBkmer-maskmapMersmapMers-depthpositionDBsimple
About meryl
From Debian's package description
meryl computes the kmer content of genomic sequences. Kmer content is represented as a list of kmers and the number of times each occurs in the input sequences. The kmer can be restricted to only the forward kmer, only the reverse kmer, or the canonical kmer (lexicographically smaller of the forward and reverse kmer at each location). Meryl can report the histogram of counts, the list of kmers and their counts, or can perform mathematical and set operations on the processed data files.
This package is part of the Kmer suite.
From Debian's description of the meryl package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libstdc++6
Related apps
- sim4dbbatch spliced alignment of cDNA sequences to a target genomeCommand line
- atacgenome assembly-to-assembly comparisonCommand line
- leaffbiological sequence library utilities and applicationsCommand line
- salmidrapid Kmer based Salmonella identifier from sequence dataCommand line
- seergenomic sequence element (kmer) enrichment analysisCommand line
- spalnsplicing-aware transcript-alignment to genomic DNACommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the meryl package, under that package's license.
- Description: Debian's description of the meryl package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.