salmid
rapid Kmer based Salmonella identifier from sequence data
Command lineScience
Not tested on a device yet. What that means
Commands in the package
SalmID
About salmid
From Debian's package description
SalmID enables rapid confirmation of Salmonella spp. and subspp. from sequence data. This is done by checking taxonomic ID of single isolate samples. Currently only IDs Salmonella species and subspecies, and some common contaminants (Listeria, Escherichia).
From Debian's description of the salmid package, under that package's license.
Dependencies
Depends on
Related apps
- FastQC quality controlquality control for high throughput sequence data
- ncbi-entrez-directNCBI Entrez utilities on the command lineCommand line
- seergenomic sequence element (kmer) enrichment analysisCommand line
- vttoolset for short variant discovery in genetic sequence dataCommand line
- estscanORF-independent detector of coding DNA sequencesCommand line
- spalnsplicing-aware transcript-alignment to genomic DNACommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the salmid package, under that package's license.
- Description: Debian's description of the salmid package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.