nanofilt
filtering and trimming of long read sequencing data
Command lineDevelopment
Not tested on a device yet. What that means
Commands in the package
NanoFilt
About nanofilt
From Debian's package description
Filtering and trimming of long read sequencing data. Filtering on quality and/or read length, and optional trimming after passing filters. Reads from stdin, writes to stdout. Optionally reads directly from an uncompressed file specified on the command line.
Intended to be used:
1. directly after fastq extraction. 2. prior to mapping. 3. in a stream between extraction and mapping.
From Debian's description of the nanofilt package, under that package's license.
Dependencies
Depends on
python3-biopythonpython3-pandaspython3
Related apps
- mrtparseread and analyze the MRT format data (utilities)Command line
- pecoSimplistic interactive filtering toolCommand line
- pygtailread log file lines that have not been readCommand line
- humanlogLogs for humans to read (binary)Command line
- jsonlintvalidating parser of JSON data structuresCommand line
- hieraLight weight hierarchical data storeCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the nanofilt package, under that package's license.
- Description: Debian's description of the nanofilt package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.