pal2nal
converts proteins to genomic DNA alignment
Command lineScience
Not tested on a device yet. What that means
Commands in the package
pal2nal.pl
About pal2nal
From Debian's package description
PAL2NAL is a program that converts a multiple sequence alignment of proteins and the corresponding DNA (or mRNA) sequences into a codon-based DNA alignment. The program automatically assigns the corresponding codon sequence even if the input DNA sequence has mismatches with the input protein sequence, or contains UTRs, polyA tails. It can also deal with frame shifts in the input alignment, which is suitable for the analysis of pseudogenes. The resulting codon-based DNA alignment can further be subjected to the calculation of synonymous (Ks) and non-synonymous (Ka) substitution rates.
From Debian's description of the pal2nal package, under that package's license.
Dependencies
Recommends
Related apps
- muscleMultiple alignment program of protein sequencesCommand line
- clustaloGeneral-purpose multiple sequence alignment program for proteinsCommand line
- wisecomparison of biopolymers, like DNA and protein sequencesCommand line
- prodamultiple alignment of protein sequencesCommand line
- mustangmultiple structural alignment of proteinsCommand line
- tm-alignstructural alignment of proteinsCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the pal2nal package, under that package's license.
- Description: Debian's description of the pal2nal package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.