pbbamtools
processing Pacific Biosciences binary alignment/map files
Command lineScience
Not tested on a device yet. What that means
Commands in the package
bam2samccs-kinetics-bystrandifypbbamifypbindexpbindexdumppbmerge
About pbbamtools
From Debian's package description
The BAM format is a binary, compressed, record-oriented container format for raw or aligned sequence reads. The associated SAM format is a text representation of the same data. The specifications for BAM/SAM are maintained by the SAM/BAM Format Specification Working Group.
PacBio-produced BAM files are fully compatible with the BAM specification, but makes use of the extensibility mechanisms of the BAM specification to encode PacBio-specific information.
This package provides command-line utilities for working with PacBio BAM files.
From Debian's description of the pbbamtools package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libhts3t64libpbbam2.4.0libpbcopper2.3.0libstdc++6
Recommends
Related apps
- bamtoolstoolkit for manipulating BAM (genome alignment) filesCommand line
- samclipfilter SAM file for soft and hard clipped alignmentsCommand line
- gmtsar-coreInSAR processing system based on Generic Mapping Tools - coreCommand line
- QGIS DesktopGeographic Information System (GIS)
- QMapShackGPS mapping (GeoTiff and vector) and GPSr management
VikingMap Based GPS Data Manager (live data capable).
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the pbbamtools package, under that package's license.
- Description: Debian's description of the pbbamtools package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.