samtools

processing sequence alignments in SAM, BAM and CRAM formats

Command lineScience

Not tested on a device yet. What that means

Commands in the package

samtools
ace2sam
blast2sam.pl
bowtie2sam.pl
export2sam.pl
fasta-sanitize.pl
interpolate_sam.pl
maq2sam-long
maq2sam-short
md5fa
md5sum-lite
novo2sam.pl
plot-ampliconstats
plot-bamstats
psl2sam.pl
sam2vcf.pl
samtools.pl
seq_cache_populate.pl
soap2sam.pl
wgsim
wgsim_eval.pl
zoom2sam.pl

About samtools

From Debian's package description

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

From Debian's description of the samtools package, under that package's license.

Dependencies

Depends on

libc6
libhts3t64
libncurses6
libtinfo6
zlib1g

Related apps

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dolfin-binExecutable scripts for DOLFINCommand line
ea-utilscommand-line tools for processing biological sequencing dataCommand line

All Linux science apps

Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the samtools package, under that package's license.
Description: Debian's description of the samtools package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.