pizzly

Identifies gene fusions in RNA sequencing data

Command lineScience

Not tested on a device yet. What that means

Commands in the package

pizzly
flatten_json.py
get_fragment_length.py
pizzly_flatten_json.py

About pizzly

From Debian's package description

For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.
Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.

From Debian's description of the pizzly package, under that package's license.

Dependencies

Depends on

libc6
libgcc-s1
libstdc++6
zlib1g
python3
kallisto

Recommends

python3-h5py

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Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the pizzly package, under that package's license.
Description: Debian's description of the pizzly package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.