bioperl

Perl tools for computational molecular biology

Command lineScience

Not tested on a device yet. What that means

Commands in the package

bp_aacomp
bp_bioflat_index
bp_biogetseq
bp_dbsplit
bp_extract_feature_seq
bp_fastam9_to_table
bp_fetch
bp_filter_search
bp_find-blast-matches
bp_gccalc
bp_genbank2gff3
bp_index
bp_local_taxonomydb_query
bp_make_mrna_protein
bp_mask_by_search
bp_mrtrans
bp_mutate
bp_nexus2nh
bp_nrdb
bp_oligo_count
bp_process_gadfly
bp_process_sgd
bp_revtrans-motif
bp_search2alnblocks
bp_search2gff
bp_search2table
bp_search2tribe
bp_seq_length
bp_seqconvert
bp_seqcut
bp_seqpart
bp_seqret
bp_seqretsplit
bp_split_seq
bp_sreformat
bp_taxid4species
bp_taxonomy2tree
bp_translate_seq
bp_tree2pag
bp_unflatten_seq

About bioperl

From Debian's package description

The Bioperl project is a coordinated effort to collect computational methods routinely used in bioinformatics into a set of standard CPAN-style, well-documented, and freely available Perl modules. It is well-accepted throughout the community and used in many high-profile projects, e.g., Ensembl.
The recommended packages are needed to run some of the included binaries, for a detailed explanation including the specific Perl modules please see README.Debian.
The suggested package enhances the manual pages.

From Debian's description of the bioperl package, under that package's license.

Dependencies

Depends on

libbio-perl-perl
perl
libtest-most-perl

Recommends

bioperl-run
perl-doc
libhttp-message-perl
libwww-perl
libcache-cache-perl
libbio-perl-run-perl
libdbi-perl
libgd-gd2-perl
libapache-dbi-perl
liburi-perl
libxml-simple-perl
libyaml-perl
libace-perl
liblist-moreutils-perl
libxml-twig-perl
libset-scalar-perl

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Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the bioperl package, under that package's license.
Description: Debian's description of the bioperl package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.