presto
toolkit for processing B and T cell sequences
Command lineDevelopment
Not tested on a device yet. What that means
Commands in the package
AlignSets.pyAssemblePairs.pyBuildConsensus.pyClusterSets.pyCollapseSeq.pyConvertHeaders.pyEstimateError.pyFilterSeq.pyMaskPrimers.pyPairSeq.pyParseHeaders.pyParseLog.pySplitSeq.pyUnifyHeaders.py
About presto
From Debian's package description
pRESTO is a toolkit for processing raw reads from high-throughput sequencing of B cell and T cell repertoires.
Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included.
From Debian's description of the presto package, under that package's license.
Dependencies
Depends on
python3python3-presto
Related apps
- opennlpwrapper for Apache OpenNLP natural language text processing toolkitCommand line
- tkToolkit for Tcl and X11 (default version) - windowing shellCommand line
- oathtoolOATH Toolkit oathtool command line toolCommand line
- translate-toolkitToolkit assisting in the localization of softwareCommand line
- wabtWebAssembly Binary ToolkitCommand line
- wxGladeA GUI designer written in Python with the popular GUI toolkit wxPython
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the presto package, under that package's license.
- Description: Debian's description of the presto package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.