quorum
QUality Optimized Reads of genomic sequences
Command lineScience
Not tested on a device yet. What that means
Commands in the package
quorummerge_mate_pairsquorum_create_databasequorum_error_correct_readssplit_mate_pairs
About quorum
From Debian's package description
QuorUM enables to obtain trimmed and error-corrected reads that result in assemblies with longer contigs and fewer errors. QuorUM provides best performance compared to other published error correctors in several metrics. QuorUM is efficiently implemented making use of current multi- core computing architectures and it is suitable for large data sets (1 billion bases checked and corrected per day per core). The third-party assembler (SOAPdenovo) benefits significantly from using QuorUM error- corrected reads. QuorUM error corrected reads result in a factor of 1.1 to 4 improvement in N50 contig size compared to using the original reads with SOAPdenovo for the data sets investigated.
From Debian's description of the quorum package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libjellyfish-2.0-2libstdc++6
Related apps
- lokiMCMC linkage analysis on general pedigreesCommand line
- gria language for scientific illustrationCommand line
- EasyChem Chemical Structures EditorCreate high-quality chemical formulas
- XlogAmateur Radio logging program
- minimap2versatile pairwise aligner for genomic and spliced nucleotide sequencesCommand line
- ismrmrd-toolscommand-line tools for ISMRMRDCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the quorum package, under that package's license.
- Description: Debian's description of the quorum package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.