mummer
Efficient sequence alignment of full genomes
Command lineScience
Not tested on a device yet. What that means
Commands in the package
mummercombineMUMsdelta-filterdelta2blocksdelta2mafdnadiffexact-tandemsgapsmapviewmgapsmummer-annotatemummerplotnucmernucmer2xfigpromerrepeat-matchrun-mummer1run-mummer3show-alignsshow-coordsshow-diffshow-snpsshow-tiling
About mummer
From Debian's package description
MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences.
From Debian's description of the mummer package, under that package's license.
Dependencies
Depends on
Related apps
- condordistributed workload management systemCommand line
- astrometry.netAstrometry plate solverCommand line
- fsaFast Statistical Alignment of protein, RNA or DNA sequencesCommand line
- gbrowseGMOD Generic Genome BrowserCommand line
- samtoolsprocessing sequence alignments in SAM, BAM and CRAM formatsCommand line
- bcftoolsgenomic variant calling and manipulation of VCF/BCF filesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the mummer package, under that package's license.
- Description: Debian's description of the mummer package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.