SeaView
Edits multiple sequence alignments and prints them in PostScript format.
Not tested on a device yet. What that means
SeaView in Breadstick
Breadstick runs Debian's own seaview package for ARM64, the build a Debian 13 computer with an ARM processor installs, so SeaView should look and behave as it does on a Linux PC. On Samsung DeX, Floating mode opens it as its own window beside your Android apps, and Desktop mode runs it on a full Linux desktop.
Everything runs on the device's own processor, with no GPU compute, and instruments attached over USB are not visible to Linux apps. More about science apps in Breadstick.
About SeaView
From Debian's package description
SeaView is a viewer and editor of multiple sequence alignments, i.e. DNA or protein sequences are positioned each in their own separate line, such that the nucleotide/amino acid at a particular position (column) is presumed to have the same biochemical property.
SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees. Alignments can be manually edited. It drives the programs Muscle or Clustal Omega for multiple sequence alignment, and also allows one to use any external alignment algorithm able to read and write FASTA-formatted files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood using the program PhyML 3.0.
SeaView draws phylogenetic trees on screen or PostScript files, and allows one to download sequences from EMBL/GenBank/UniProt using the Internet.
From Debian's description of the seaview package, under that package's license.
- Keywords
- genomics
- Menu categories
- Biology, Education, Science
Related apps
igvdesktop genome vizualisation tool
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meganInteractive exploration and analysis of large-scale microbiome sequencing data
rockhopperguiSystem for analyzing bacterial RNA-seq data
Garlic Protein VisualizationVisualize and investigate proteins and some geometric objects
Sources and licenses
- Name and summary: the desktop entry in Debian's seaview package, under that package's license.
- Description: Debian's description of the seaview package, under that package's license.
- Icon: the project's own, from Debian's AppStream icon cache for the seaview package.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.