seqan-raptor
pre-filter for querying very large collections of nucleotide sequences
Command lineScience
Not tested on a device yet. What that means
Commands in the package
raptor
About seqan-raptor
From Debian's package description
Raptor is a system for approximately searching many queries such as next-generation sequencing reads or transcripts in large collections of nucleotide sequences. Raptor uses winnowing minimizers to define a set of representative k-mers, an extension of the interleaved Bloom filters (IBFs) as a set membership data structure and probabilistic thresholding for minimizers. This approach allows compression and partitioning of the IBF to enable the effective use of secondary memory.
From Debian's description of the seqan-raptor package, under that package's license.
Dependencies
Depends on
libbz2-1.0libc6libgcc-s1libgomp1libstdc++6libyaml-cpp0.8zlib1g
Related apps
- mafftMultiple alignment program for amino acid or nucleotide sequencesCommand line
- clustalwglobal multiple nucleotide or peptide sequence alignmentCommand line
- minimap2versatile pairwise aligner for genomic and spliced nucleotide sequencesCommand line
- hhsuitesensitive protein sequence searching based on HMM-HMM alignmentCommand line
- fasttreephylogenetic trees from alignments of nucleotide or protein sequencesCommand line
- fasta3tools for searching collections of biological sequencesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the seqan-raptor package, under that package's license.
- Description: Debian's description of the seqan-raptor package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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