snakemake
pythonic workflow management system
Command lineScience
Not tested on a device yet. What that means
Commands in the package
snakemakesnakemake-bash-completion
About snakemake
From Debian's package description
Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in Python style, together with a fast and comfortable execution environment.
From Debian's description of the snakemake package, under that package's license.
Dependencies
Depends on
python3-configargparsepython3-connection-poolpython3-datriepython3-docutilspython3-gitpython3-humanfriendlypython3-jinja2python3-jsonschemapython3-nbformatpython3-packagingpython3-platformdirspython3-psutilpython3-pulppython3-requestspython3-retrypython3-smart-openpython3-stopitpython3-tabulatepython3-throttlerpython3-toposortpython3-wraptpython3-yamlpython3-ytepython3ca-certificatespython3-ratelimiterlibjs-bootstraplibjs-jquery
Recommends
cwltoolimagemagickpython3-tzpython3-yappipython3-pygmentspython3-azure-storagepython3-biopythonpython3-boto3python3-botocorepython3-dropboxpython3-flaskpython3-ftputilpython3-irodsclientpython3-kubernetespython3-urllib3
Related apps
- condordistributed workload management systemCommand line
- cwl-upgraderCommon Workflow Language standalone document upgraderCommand line
- condor-upgrade-checksdistributed workload management system - single node configurationCommand line
- TOPPASan workflow engine for mass spectrometry data analysis
- cwlformatcode formatter for Common Workflow LanguageCommand line
- cwltestCommon Workflow Language testing frameworkCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the snakemake package, under that package's license.
- Description: Debian's description of the snakemake package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.