TOPPAS

About TOPPAS

From Debian's package description

TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis of HPLC/MS data. It consists of a set of numerous small applications that can be chained together to create analysis pipelines tailored for a specific problem. The applications make use of the libopenms library. Some examples of these applications are :

• TOPPView: A viewer for mass spectrometry data.
• TOPPAS: An assistant for GUI-driven TOPP workflow design.
• DTAExtractor: Extracts spectra of an MS run file to several files in DTA format.
• FileConverter: Converts between different MS file formats.
• FileFilter: Extracts or manipulates portions of data from peak, feature or consensus feature files.
• SpectraMerger: Merges spectra from an LC/MS map, either by precursor or by RT blocks.
• BaselineFilter: Removes the baseline from profile spectra using a top-hat filter.
• InternalCalibration: Applies an internal calibration.
• PTModel: Trains a model for the prediction of proteotypic peptides from a training set.
• RTPredict: Predicts retention times for peptides using a model trained by RTModel.
• ExecutePipeline: Executes workflows created by TOPPAS.

From Debian's description of the topp package, under that package's license.

Menu categories

Biology, Chemistry, Science

Also in the package

TOPPView