snap-aligner
Scalable Nucleotide Alignment Program
Command lineScience
Not tested on a device yet. What that means
Commands in the package
snap-alignerSNAPCommand
About snap-aligner
From Debian's package description
SNAP is a new sequence aligner that is 3-20x faster and just as accurate as existing tools like BWA-mem, Bowtie2 and Novoalign. It runs on commodity x86 processors, and supports a rich error model that lets it cheaply match reads with more differences from the reference than other tools. This gives SNAP up to 2x lower error rates than existing tools (in some cases) and lets it match larger mutations that they may miss. SNAP also natively reads BAM, FASTQ, or gzipped FASTQ, and natively writes SAM or BAM, with built-in sorting, duplicate marking, and BAM indexing.
From Debian's description of the snap-aligner package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libstdc++6zlib1g
Related apps
- mafftMultiple alignment program for amino acid or nucleotide sequencesCommand line
- hisat2graph-based alignment of short nucleotide reads to many genomesCommand line
- clustalwglobal multiple nucleotide or peptide sequence alignmentCommand line
- minimap2versatile pairwise aligner for genomic and spliced nucleotide sequencesCommand line
- fasttreephylogenetic trees from alignments of nucleotide or protein sequencesCommand line
- roaryhigh speed stand alone pan genome pipelineCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the snap-aligner package, under that package's license.
- Description: Debian's description of the snap-aligner package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.