snp-sites
Binary code for the package snp-sites
Command lineScience
Not tested on a device yet. What that means
Commands in the package
snp-sites
About snp-sites
From Debian's package description
This program finds single nucleotide polymorphism (SNP) sites from multi-fasta alignment input files (which might be compressed). Its output can be in various widely used formats (Multi Fasta Alignment, Vcf, phylip).
The software has been developed at the Wellcome Trust Sanger Institute.
A Single Nucleotide - polymorphism (SNP, pronounced snip; plural snips) is a DNA sequence variation occurring when a Single Nucleotide — A, T, C or G — in the genome (or other shared sequence) differs between members of a biological species or paired chromosomes. For example, two sequenced DNA fragments from different individuals, AAGCCTA to AAGCTTA, contain a difference in a single nucleotide. In this case there are two alleles. Almost all common SNPs have only two alleles.
From Debian's description of the snp-sites package, under that package's license.
Dependencies
Depends on
libc6libsnp-sites1
Related apps
- gmapspliced and SNP-tolerant alignment for mRNA and short readsCommand line
- seqan-appsC++ library for the analysis of biological sequencesCommand line
- pscan-tfbssearch for transcription factor binding sitesCommand line
- ncbi-epcrTool to test a DNA sequence for the presence of sequence tagged sitesCommand line
- profisisprediction of protein-protein interaction sites from sequenceCommand line
- concavitypredictor of protein ligand binding sites from structure and conservationCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the snp-sites package, under that package's license.
- Description: Debian's description of the snp-sites package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.