snpsift
tool to annotate and manipulate genome variants - tool
Command lineDevelopment
Not tested on a device yet. What that means
Commands in the package
snpSift
About snpsift
From Debian's package description
SnpSift is a toolbox that allows one to filter and manipulate annotated files. Once the genomic variants have been annotated, one needs to filter them out in order to find the "interesting / relevant variants". Given the large data files, this is not a trivial task (e.g. one cannot load all the variants into XLS spreadsheet). SnpSift helps to perform this VCF file manipulation and filtering required at this stage in data processing pipelines.
This package contains the command line tool.
From Debian's description of the snpsift package, under that package's license.
Dependencies
Depends on
default-jrelibsnpsift-java
Related apps
- lintianDebian package checkerCommand line
- Valgrindinstrumentation framework for building dynamic analysis toolsCommand lineSupported
- cmake-formatsource code formatter for cmake listfilesCommand line
- python-odf-toolsPython tools to manipulate OpenDocument filesCommand line
Lepton EDA Attribute EditorManipulate component attributes with lepton-attrib- siftoolutility to manipulate Singularity Image Format (SIF) filesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the snpsift package, under that package's license.
- Description: Debian's description of the snpsift package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.