staden-io-lib-utils

programs for manipulating DNA sequencing files

Command lineScience

Not tested on a device yet. What that means

Commands in the package

append_sff
convert_trace
cram_filter
cram_index
cram_size
extract_fastq
extract_qual
extract_seq
get_comment
hash_exp
hash_extract
hash_list
hash_sff
hash_tar
index_tar
makeSCF
scf_info
scf_update
scram_flagstat
scram_merge
scram_pileup
scram_test
scramble
srf2fasta
srf2fastq
srf_extract_hash
srf_extract_linear
srf_filter
srf_index_hash
srf_info
srf_list

About staden-io-lib-utils

From Debian's package description

The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows.
This package contains the programs that are distributed with the Staden io_lib for manipulating and converting sequencing data files, and in particular files to manipulate short reads generated by second and third generation sequencers and stored in SRF format.

From Debian's description of the staden-io-lib-utils package, under that package's license.

Dependencies

Depends on

libc6
libstaden-read14t64

Related apps

snaplocation of genes from DNA sequence with hidden markov modelCommand line
gdal-binGeospatial Data Abstraction Library - Utility programsCommand line
hdf5-toolsHDF5 - Runtime toolsCommand line
ncbi-blast+next generation suite of BLAST sequence search toolsCommand line
cclibParsers and algorithms for computational chemistryCommand line
dolfin-binExecutable scripts for DOLFINCommand line

All Linux science apps

Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the staden-io-lib-utils package, under that package's license.
Description: Debian's description of the staden-io-lib-utils package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.