tree-ppuzzle
Parallelized reconstruction of phylogenetic trees by maximum likelihood
Command lineScience
Not tested on a device yet. What that means
Commands in the package
tree-ppuzzle
About tree-ppuzzle
From Debian's package description
TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.
This is the parallelized version of tree-puzzle.
From Debian's description of the tree-ppuzzle package, under that package's license.
Dependencies
Depends on
libc6libopenmpi40libsprng2mpi-default-bin
Recommends
tree-puzzle-doc
Related apps
- tree-puzzleReconstruction of phylogenetic trees by maximum likelihoodCommand line
- figtreegraphical phylogenetic tree viewerCommand line
- phymlPhylogenetic estimation using Maximum LikelihoodCommand line
- raxmlRandomized Axelerated Maximum Likelihood of phylogenetic treesCommand line
- bali-phyBayesian Inference of Alignment and PhylogenyCommand line
- phyxUNIX-style phylogenetic analyses on trees and sequencesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the tree-ppuzzle package, under that package's license.
- Description: Debian's description of the tree-ppuzzle package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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