tree-puzzle
Reconstruction of phylogenetic trees by maximum likelihood
Command lineScience
Not tested on a device yet. What that means
Commands in the package
tree-puzzle
About tree-puzzle
From Debian's package description
TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.
From Debian's description of the tree-puzzle package, under that package's license.
Dependencies
Depends on
libc6libsprng2
Recommends
tree-puzzle-doc
Related apps
- tree-ppuzzleParallelized reconstruction of phylogenetic trees by maximum likelihoodCommand line
- figtreegraphical phylogenetic tree viewerCommand line
- phymlPhylogenetic estimation using Maximum LikelihoodCommand line
- raxmlRandomized Axelerated Maximum Likelihood of phylogenetic treesCommand line
- metaphlanMetagenomic Phylogenetic AnalysisCommand line
- phastphylogenetic analysis with space/time modelsCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the tree-puzzle package, under that package's license.
- Description: Debian's description of the tree-puzzle package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.