amap-align
Protein multiple alignment by sequence annealing
Command lineScience
Not tested on a device yet. What that means
Commands in the package
amap
About amap-align
From Debian's package description
AMAP is a command line tool to perform multiple alignment of peptidic sequences. It utilizes posterior decoding, and a sequence-annealing alignment, instead of the traditional progressive alignment method. It is the only alignment program that allows one to control the sensitivity / specificity tradeoff. It is based on the ProbCons source code, but uses alignment metric accuracy and eliminates the consistency transformation.
The Java visualisation tool of AMAP 2.2 is not yet packaged in Debian.
From Debian's description of the amap-align package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libstdc++6
Related apps
- fsaFast Statistical Alignment of protein, RNA or DNA sequencesCommand line
- samtoolsprocessing sequence alignments in SAM, BAM and CRAM formatsCommand line
- hmmerprofile hidden Markov models for protein sequence analysisCommand line
- muscleMultiple alignment program of protein sequencesCommand line
- clustaloGeneral-purpose multiple sequence alignment program for proteinsCommand line
- mafftMultiple alignment program for amino acid or nucleotide sequencesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the amap-align package, under that package's license.
- Description: Debian's description of the amap-align package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.