ampliconnoise
removal of noise from 454 sequenced PCR amplicons
Command lineScience
Not tested on a device yet. What that means
Commands in the package
FClusterFastaUniqueNDistPerseusPerseusDPyroDistPyroNoisePyroNoiseAPyroNoiseMSeqDistSeqNoiseSplitClusterClustSplitClusterEven
About ampliconnoise
From Debian's package description
AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts:
Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences
Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct.
From Debian's description of the ampliconnoise package, under that package's license.
Dependencies
Depends on
libc6libgsl28libopenmpi40mafft
Recommends
mpi-default-bin
Related apps
- openfoamOpen source toolbox for Computational Fluid Dynamics (CFD) - binariesCommand line
- mipeTools to store PCR-derived dataCommand line
- ecopcrestimate PCR barcode primers qualityCommand line
- virulencefinderidentify virulence genes in total or partial sequenced isolates of bacteriaCommand line
- deblurdeconvolution for Illumina amplicon sequencingCommand line
- ncbi-epcrTool to test a DNA sequence for the presence of sequence tagged sitesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the ampliconnoise package, under that package's license.
- Description: Debian's description of the ampliconnoise package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.