Commands in the package
csv2mipegenotype2mipemipe06to07mipe08to09mipe0_9to1_0mipe2dbSTSmipe2fasmipe2genotypesmipe2htmlmipe2pcroverviewmipe2pcrprimersmipe2putativesbeprimersmipe2sbeprimersmipe2snpsmipeCheckSanityremovePcrFromMiperemoveSbeFromMiperemoveSnpFromMipesbe2mipesnp2mipesnpPosOnDesignsnpPosOnSource
About mipe
From Debian's package description
MIPE provides a standard format to exchange and/or storage of all information associated with PCR experiments using a flat text file. This will:
- allow for exchange of PCR data between researchers/laboratories
- enable traceability of the data
- prevent problems when submitting data to dbSTS or dbSNP
- enable the writing of standard scripts to extract data (e.g. a list of PCR primers, SNP positions or haplotypes for different animals)
Although this tool can be used for data storage, it's primary focus should be data exchange. For larger repositories, relational databases are more appropriate for storage of these data. The MIPE format could then be used as a standard format to import into and/or export from these databases.
From Debian's description of the mipe package, under that package's license.
Dependencies
Depends on
libxml-twig-perllibxml-perlperl
Related apps
- ecopcrestimate PCR barcode primers qualityCommand line
- ncbi-epcrTool to test a DNA sequence for the presence of sequence tagged sitesCommand line
- ampliconnoiseremoval of noise from 454 sequenced PCR ampliconsCommand line
PerlPrimerGraphical design of primers for PCR and sequencing- chimeraslayerdetects likely chimeras in PCR amplified DNACommand line
- artfastqgeneratoroutputs artificial FASTQ files derived from a reference genomeCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the mipe package, under that package's license.
- Description: Debian's description of the mipe package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.