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mipe

Tools to store PCR-derived data

Command lineScience

Install

Not tested on a device yet. What that means

Commands in the package

  • csv2mipe
  • genotype2mipe
  • mipe06to07
  • mipe08to09
  • mipe0_9to1_0
  • mipe2dbSTS
  • mipe2fas
  • mipe2genotypes
  • mipe2html
  • mipe2pcroverview
  • mipe2pcrprimers
  • mipe2putativesbeprimers
  • mipe2sbeprimers
  • mipe2snps
  • mipeCheckSanity
  • removePcrFromMipe
  • removeSbeFromMipe
  • removeSnpFromMipe
  • sbe2mipe
  • snp2mipe
  • snpPosOnDesign
  • snpPosOnSource

About mipe

From Debian's package description

MIPE provides a standard format to exchange and/or storage of all information associated with PCR experiments using a flat text file. This will:

  • allow for exchange of PCR data between researchers/laboratories
  • enable traceability of the data
  • prevent problems when submitting data to dbSTS or dbSNP
  • enable the writing of standard scripts to extract data (e.g. a list of PCR primers, SNP positions or haplotypes for different animals)

Although this tool can be used for data storage, it's primary focus should be data exchange. For larger repositories, relational databases are more appropriate for storage of these data. The MIPE format could then be used as a standard format to import into and/or export from these databases.

From Debian's description of the mipe package, under that package's license.

Dependencies

Depends on

  • libxml-twig-perl
  • libxml-perl
  • perl

Related apps

All Linux science apps

Sources and licenses

  • Name: the Debian package name.
  • Summary: Debian's short description of the mipe package, under that package's license.
  • Description: Debian's description of the mipe package, under that package's license.
  • Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
  • Popularity: Debian Popularity Contest counts.

More in About the catalog.