bandage
Bioinformatics Application for Navigating De novo Assembly Graphs Easily
Command lineScience
Not tested on a device yet. What that means
Commands in the package
Bandage
About bandage
From Debian's package description
Bandage is a GUI program that allows users to interact with the assembly graphs made by de novo assemblers such as Velvet, SPAdes, MEGAHIT and others.
De novo assembly graphs contain not only assembled contigs but also the connections between those contigs, which were previously not easily accessible. Bandage visualises assembly graphs, with connections, using graph layout algorithms. Nodes in the drawn graph, which represent contigs, can be automatically labelled with their ID, length or depth. Users can interact with the graph by moving, labelling and colouring nodes. Sequence information can also be extracted directly from the graph viewer. By displaying connections between contigs, Bandage opens up new possibilities for analysing and improving de novo assemblies that are not possible by looking at contigs alone.
More information and download links are on the Bandage website: rrwick.github.io/Bandage
The package is relevant to the field of genome assembly.
From Debian's description of the bandage package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libqt5core5t64libqt5gui5t64orlibqt5gui5-gleslibqt5svg5libqt5widgets5t64libstdc++6
Related apps
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- mapsembler2bioinformatics targeted assembly softwareCommand line
ugeneIntegrated bioinformatics toolkit- trinityrnaseqRNA-Seq De novo AssemblyCommand line
- velvetoptimiserautomatically optimise Velvet do novo assembly parametersCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the bandage package, under that package's license.
- Description: Debian's description of the bandage package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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