flye
de novo assembler for single molecule sequencing reads using repeat graphs
Command lineScience
Not tested on a device yet. What that means
Commands in the package
flyeflye-modules
About flye
From Debian's package description
Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PacBio / ONT reads as input and outputs polished contigs. Flye also has a special mode for metagenome assembly.
From Debian's description of the flye package, under that package's license.
Dependencies
Depends on
Related apps
- ea-utilscommand-line tools for processing biological sequencing dataCommand line
- hisat2graph-based alignment of short nucleotide reads to many genomesCommand line
- cutadaptClean biological sequences from high-throughput sequencing readsCommand line
- dascrubberalignment-based scrubbing pipeline for DNA sequencing readsCommand line
- velvetNucleic acid sequence assembler for very short readsCommand line
- idbaiterative De Bruijn Graph short read assemblersCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the flye package, under that package's license.
- Description: Debian's description of the flye package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.