velvetoptimiser
automatically optimise Velvet do novo assembly parameters
Command lineScience
Not tested on a device yet. What that means
Commands in the package
velvetoptimiser
About velvetoptimiser
From Debian's package description
VelvetOptimiser is a multi-threaded Perl script for automatically optimising the three primary parameter options (K, -exp_cov, -cov_cutoff) for the Velvet de novo sequence assembler.
From Debian's description of the velvetoptimiser package, under that package's license.
Dependencies
Depends on
Related apps
- raconconsensus module for raw de novo DNA assembly of long uncorrected readsCommand line
- trinityrnaseqRNA-Seq De novo AssemblyCommand line
- bandageBioinformatics Application for Navigating De novo Assembly Graphs EasilyCommand line
- flyede novo assembler for single molecule sequencing reads using repeat graphsCommand line
- abyssde novo, parallel, sequence assembler for short readsCommand line
- surankcoSupervised Ranking of Contigs in de novo AssembliesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the velvetoptimiser package, under that package's license.
- Description: Debian's description of the velvetoptimiser package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.