bioawk
extension of awk for biological sequence analysis
Command lineScience
Not tested on a device yet. What that means
Commands in the package
bioawk
About bioawk
From Debian's package description
Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names. It also adds a few built-in functions and an command line option to use TAB as the input/output delimiter. When the new functionality is not used, bioawk is intended to behave exactly the same as the original BWK awk.
From Debian's description of the bioawk package, under that package's license.
Dependencies
Depends on
libc6zlib1g
Related apps
- hmmerprofile hidden Markov models for protein sequence analysisCommand line
- cutadaptClean biological sequences from high-throughput sequencing readsCommand line
- fasta3tools for searching collections of biological sequencesCommand line
- hmmer2profile hidden Markov models for protein sequence analysisCommand line
- last-aligngenome-scale comparison of biological sequencesCommand line
- seergenomic sequence element (kmer) enrichment analysisCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the bioawk package, under that package's license.
- Description: Debian's description of the bioawk package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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