cutadapt
Clean biological sequences from high-throughput sequencing reads
Command lineScience
Not tested on a device yet. What that means
Commands in the package
cutadapt
About cutadapt
From Debian's package description
Cutadapt helps with biological sequence clean tasks by finding the adapter or primer sequences in an error-tolerant way. It can also modify and filter reads in various ways. Adapter sequences can contain IUPAC wildcard characters. Also, paired-end reads and even colorspace data is supported. If you want, you can also just demultiplex your input data, without removing adapter sequences at all.
This package contains the user interface.
From Debian's description of the cutadapt package, under that package's license.
Dependencies
Depends on
python3python3-cutadapt
Related apps
- ea-utilscommand-line tools for processing biological sequencing dataCommand line
- FastQC quality controlquality control for high throughput sequence data
- sra-toolkitutilities for the NCBI Sequence Read ArchiveCommand line
- ncbi-entrez-directNCBI Entrez utilities on the command lineCommand line
- fasta3tools for searching collections of biological sequencesCommand line
- dascrubberalignment-based scrubbing pipeline for DNA sequencing readsCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the cutadapt package, under that package's license.
- Description: Debian's description of the cutadapt package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.