dascrubber
alignment-based scrubbing pipeline for DNA sequencing reads
Command lineScience
Not tested on a device yet. What that means
Commands in the package
DAScoverDASeditDASmapDASpatchDASqvDASrealignDAStrimREPcoverREPqvREPtrim
About dascrubber
From Debian's package description
The Dazzler Scrubbing Suite produces a set of edited reads that are guaranteed to
- be continuous stretches of the underlying genome (i.e. no unremoved adapters and not chimers)
- have no very low quality stretches (i.e. the error rate never exceeds some reasonable maximum, 20% or so in the case of Pacbio data).
Its secondary goal is to do so with the minimum removal of data and splitting of reads.
From Debian's description of the dascrubber package, under that package's license.
Dependencies
Depends on
libc6
Related apps
- hisat2graph-based alignment of short nucleotide reads to many genomesCommand line
- prankProbabilistic Alignment Kit for DNA, codon and amino-acid sequencesCommand line
- cutadaptClean biological sequences from high-throughput sequencing readsCommand line
- rsemRNA-Seq by Expectation-MaximizationCommand line
- staden-io-lib-utilsprograms for manipulating DNA sequencing filesCommand line
- roaryhigh speed stand alone pan genome pipelineCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the dascrubber package, under that package's license.
- Description: Debian's description of the dascrubber package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.