FastQC quality control
quality control for high throughput sequence data
Not tested on a device yet. What that means
About FastQC quality control
From Debian's package description
FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.
The main functions of FastQC are
- Import of data from BAM, SAM or FastQ files (any variant)
- Providing a quick overview to tell you in which areas there may be problems
- Summary graphs and tables to quickly assess your data
- Export of results to an HTML based permanent report
- Offline operation to allow automated generation of reports without running the interactive application
From Debian's description of the fastqc package, under that package's license.
- Keywords
- genomics
- Menu categories
- Biology, Science
Dependencies
Depends on
libcommons-math3-javalibjbzip2-javalibhtsjdk-javalibfindbin-libs-perldefault-jre
Related apps
igvdesktop genome vizualisation tool
SeaViewEdits multiple sequence alignments and prints them in PostScript format.- ScoaryPangenome-wide association studies
artArtemis genome browser and annotation tool
meganInteractive exploration and analysis of large-scale microbiome sequencing data
rockhopperguiSystem for analyzing bacterial RNA-seq data
Sources and licenses
- Name and summary: the desktop entry in Debian's fastqc package, under that package's license.
- Description: Debian's description of the fastqc package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.