Breadstick Get it on Google Play

FastQC quality control

quality control for high throughput sequence data

Science

Install

Not tested on a device yet. What that means

About FastQC quality control

From Debian's package description

FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.

The main functions of FastQC are

  • Import of data from BAM, SAM or FastQ files (any variant)
  • Providing a quick overview to tell you in which areas there may be problems
  • Summary graphs and tables to quickly assess your data
  • Export of results to an HTML based permanent report
  • Offline operation to allow automated generation of reports without running the interactive application

From Debian's description of the fastqc package, under that package's license.

Keywords
genomics
Menu categories
Biology, Science

Dependencies

Depends on

  • libcommons-math3-java
  • libjbzip2-java
  • libhtsjdk-java
  • libfindbin-libs-perl
  • default-jre

Related apps

All Linux science apps

Sources and licenses

  • Name and summary: the desktop entry in Debian's fastqc package, under that package's license.
  • Description: Debian's description of the fastqc package, under that package's license.
  • Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
  • Popularity: Debian Popularity Contest counts.

More in About the catalog.