daligner
local alignment discovery between long nucleotide sequencing reads
Command lineScience
Not tested on a device yet. What that means
Commands in the package
dalignerHPC.dalignerLA2ONELAcatLAcheckLAmergeLAshowLAsortLAsplitONE2LA
About daligner
From Debian's package description
These tools permit one to find all significant local alignments between reads encoded in a Dazzler database. The assumption is that the reads are from a Pacific Biosciences RS II long read sequencer. That is, the reads are long and noisy, up to 15% on average.
From Debian's description of the daligner package, under that package's license.
Dependencies
Depends on
libc6
Related apps
- mafftMultiple alignment program for amino acid or nucleotide sequencesCommand line
- hisat2graph-based alignment of short nucleotide reads to many genomesCommand line
- clustalwglobal multiple nucleotide or peptide sequence alignmentCommand line
- cutadaptClean biological sequences from high-throughput sequencing readsCommand line
- rsemRNA-Seq by Expectation-MaximizationCommand line
- fasttreephylogenetic trees from alignments of nucleotide or protein sequencesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the daligner package, under that package's license.
- Description: Debian's description of the daligner package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.