dextractor
(d)extractor and compression command library
Command lineScience
Not tested on a device yet. What that means
Commands in the package
dexqvdextadextractundexqvundexta
About dextractor
From Debian's package description
Dextractor commands allow one to pull exactly and only the information needed for assembly and reconstruction from the source HDF5 files produced by the PacBio RS II sequencer, or from the source BAM files produced by the PacBio Sequel sequencer.
For each of the three extracted file types -- fasta, quiva, and arrow -- the library contains commands to compress the given file type, and to decompress it, which is a reversible process delivering the original uncompressed file. The compressed .fasta files, with the extension .dexta, consume 1/4 byte per base. The compressed .quiva files, with the extension .dexqv, consume 1.5 bytes per base on average, and the compressed .arrow files, with the extension .dexar, consume 1/4 byte per base
For more information, please view the available documentation at https://github.com/thegenemyers/DEXTRACTOR
From Debian's description of the dextractor package, under that package's license.
Dependencies
Depends on
libc6libhdf5-310
Related apps
- source-extractorSource extractor for astronomical imagesCommand line
- psfexPoint Spread Function model extractorCommand line
- wzipLossy compression and denoisingCommand line
- ont-fast5-apisimple interface to HDF5 files of the Oxford Nanopore .fast5 file formatCommand line
- picoporelossless compression of Nanopore filesCommand line
- proj-binCartographic projection library (tools)Command line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the dextractor package, under that package's license.
- Description: Debian's description of the dextractor package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.