dialign-tx
Segment-based multiple sequence alignment
Command lineScience
Not tested on a device yet. What that means
Commands in the package
dialign-tx
About dialign-tx
From Debian's package description
DIALIGN-TX is a command line tool to perform multiple alignment of protein or DNA sequences. It is a complete reimplementation of the segment-base approach including several new improvements and heuristics that significantly enhance the quality of the output alignments compared to DIALIGN 2.2 and DIALIGN-T. For pairwise alignment, DIALIGN-TX uses a fragment-chaining algorithm that favours chains of low-scoring local alignments over isolated high-scoring fragments. For multiple alignment, DIALIGN-TX uses an improved greedy procedure that is less sensitive to spurious local sequence similarities.
From Debian's description of the dialign-tx package, under that package's license.
Dependencies
Depends on
libc6dialign-tx-data
Related apps
- samtoolsprocessing sequence alignments in SAM, BAM and CRAM formatsCommand line
- muscleMultiple alignment program of protein sequencesCommand line
- clustaloGeneral-purpose multiple sequence alignment program for proteinsCommand line
- mafftMultiple alignment program for amino acid or nucleotide sequencesCommand line
- ncbi-entrez-directNCBI Entrez utilities on the command lineCommand line
SeaViewEdits multiple sequence alignments and prints them in PostScript format.
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the dialign-tx package, under that package's license.
- Description: Debian's description of the dialign-tx package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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