drop-seq-tools

analyzing Drop-seq data

Command lineScience

Not tested on a device yet. What that means

Commands in the package

Drop-seq_alignment.sh
create_Drop-seq_reference_metadata.sh
drop-seq

About drop-seq-tools

From Debian's package description

This software provide for core computational analysis of Drop-seq data, which shows you how to transform raw sequence data into an expression measurement for each gene in each individual cell.

From Debian's description of the drop-seq-tools package, under that package's license.

Dependencies

Depends on

libbarclay-java
libbiojava6-java
libcommons-collections4-java
libcommons-io-java
libcommons-lang-java
libcommons-math3-java
libgoogle-gson-java
libguava-java
libhtsjdk-java
libla4j-java
libpicard-java
libyaml-snake-java
default-jre
java-wrappers
picard-tools

Related apps

palpPackage for Analyzing Lattice PolytopesCommand line
metaphlanMetagenomic Phylogenetic AnalysisCommand line
bali-phyBayesian Inference of Alignment and PhylogenyCommand line
cd-hitsuite of programs designed to quickly group sequencesCommand line
pycoqccomputes metrics and generates Interactive QC plotsCommand line
salmonwicked-fast transcript quantification from RNA-seq dataCommand line

All Linux science apps

Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the drop-seq-tools package, under that package's license.
Description: Debian's description of the drop-seq-tools package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.