cd-hit

suite of programs designed to quickly group sequences

Command lineScience

Not tested on a device yet. What that means

Commands in the package

cd-hit
cdhit
cd-hit-2d
cd-hit-2d-para
cd-hit-454
cd-hit-div
cd-hit-est
cd-hit-est-2d
cd-hit-para
cdhit-2d
cdhit-454
cdhit-est
cdhit-est-2d
clstr2tree
clstr_merge
clstr_merge_noorder
clstr_reduce
clstr_renumber
clstr_rev
clstr_sort_by
clstr_sort_prot_by
make_multi_seq

About cd-hit

From Debian's package description

cd-hit contains a number of programs designed to quickly group sequences. cd-hit groups proteins into clusters that meet a user-defined similarity threshold. cd-hit-est is similar to cd-hit, but designed to group nucleotide sequences (without introns). cd-hit-est-2d is similar to cd-hit-2d but designed to compare two nucleotide datasets. A number of other related programs are also in this package. Please see the cd-hit user manual, also part of this package, for further information.

From Debian's description of the cd-hit package, under that package's license.

Dependencies

Depends on

libc6
libgcc-s1
libgomp1
libstdc++6
zlib1g
perl

Related apps

gdal-binGeospatial Data Abstraction Library - Utility programsCommand line
lokiMCMC linkage analysis on general pedigreesCommand line
gbrowseGMOD Generic Genome BrowserCommand line
samtoolsprocessing sequence alignments in SAM, BAM and CRAM formatsCommand line
gria language for scientific illustrationCommand line
vcftoolsCollection of tools to work with VCF filesCommand line

All Linux science apps

Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the cd-hit package, under that package's license.
Description: Debian's description of the cd-hit package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.