pycoqc
computes metrics and generates Interactive QC plots
Command lineScience
Not tested on a device yet. What that means
Commands in the package
pycoQCBarcode_splitFast5_to_seq_summary
About pycoqc
From Debian's package description
PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data
PycoQC relies on the sequencing_summary.txt file generated by Albacore and Guppy, but if needed it can also generates a summary file from basecalled fast5 files. The package supports 1D and 1D2 runs generated with Minion, Gridion and Promethion devices and basecalled with Albacore 1.2.1+ or Guppy 2.1.3+
From Debian's description of the pycoqc package, under that package's license.
Dependencies
Depends on
python3-h5pypython3-jinja2python3-numpypython3-pandaspython3-plotlypython3-pysampython3-scipypython3-tqdmpython3python3-pkg-resources
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Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the pycoqc package, under that package's license.
- Description: Debian's description of the pycoqc package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.